Arabidopsis membrane protein database

Author: qpdi

August undefined, 2024

WebThe Arabidopsis Interactions Viewer queries a database of 70944 predicted and 4300 confirmed Arabidopsis interacting proteins. The predicted interactions (interologs) were generated by Drs. Matt Geisler and Jane Geisler-Lee (Geisler-Lee et al., 2007) at the Southern Illinois University. Their current version is Interactome 2.0. http://aramemnon.botanik.uni-koeln.de/

MIND - Carnegie Institution for Science

Web6 giu 2002 · Arabidopsis thaliana (Mouse-ear cress) Amino acids. 434. ... osmotic water permeability of the plasma membrane (Pos), drought-induced resistance and rhizogenesis, response to glucose, high light stress, ... Protein-protein interaction databases. BioGRID. 14001 65 interactors; DIP. DIP-36706N; IntAct. P49597 34 interactors; MINT. P49597; Web28 dic 2024 · Using AtGET1-GFP–expressing Arabidopsis plants, we detected an unknown membrane protein, At4g32680, which we temporarily assigned as G1IP (AtGET1-interacting protein). The protein shows low sequence similarity to the opisthokont Get2/CAML but apparent conservation of structural features: a positively charged, … hot springs near banff

Agriculture Free Full-Text Genome-Wide Identification and ...

Webmpstruc is a curated database of membrane proteins of known 3D structure. To be included in the database, a structure must be available in the RSCB Protein Data Bank (PDB) and ... (α-DOX): Arabidopsis thaliana E Eukaryota (expressed in E. coli First structure of a member of the α-DOX subfamily of cyclooxygenase-peroxidase family of … Web12 lug 2024 · Arabidopsis flotillin 2 (At5g25260) belongs to the group of plant flotillins, which are not well characterized. In contrast, metazoan flotillins are well known as … WebA database of protein subcellular localization which aims to provide an annotation for the entire proteomes of eukaryotic organisms. The database contains the experimental … lined sweat pants for men

TAIR- Proteome Resources- Protein Location - Arabidopsis

Web1 dic 2004 · The Arabidopsis Membrane Protein Library (AMPL) provides protein family-centered views of Arabidopsis membrane proteins based on the TIGR gene models (ATH1 data release 3.0). For the membrane protein view, all 4752 proteins with two or more TM spans predicted by HMMTOP ( Table 1 ) were selected, locally aligned and … hot springs near bishop caWebHere, we describe the identification of more than 300 phosphorylation sites from Arabidopsis thaliana plasma membrane proteins. These data will be a valuable … hot springs near big bear california

"WebAMPDB -- the Arabidopsis Mitochondrial Protein Database. ... Search and compare predicted membrane proteins and transporters in Arabidopsis, rice, cyanobacteria, and organellar genomes. ARTADE -- ARabidopsis Tiling-Array-based Detection of Exons. Search for Arabidopsis genes predicted by analyzing genome-wide tiling-array data in … " - Arabidopsis membrane protein database

Arabidopsis membrane protein database

Web28 lug 2024 · Common to all FucTc isoforms of plants is a short N-terminal cytosolic tail that is devoid of obvious nuclear localization signals (NLSs) usually found in transmembrane proteins that upon insertion into the ER (eg, SUN proteins) 24 are then sorted to the inner nuclear membrane (INM). 25, 26 Lack of obvious NLSs from the FucTc sequence of A. … WebWe describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing ~6,200 highly reliable interactions between ~2,700 proteins. Community analyses of the resulting network shows the global organization of plant biological processes. Many novel hypothetical functional links ...

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Web1 set 2024 · 3.1 Signal Peptide Sequence Prediction . First of all, the full-length protein sequence of each interest candidate could be retrieved from any open-source databases listed in Table 1.For instance, the Gene ID number of each candidate protein in Arabidopsis thaliana was input into the database and the FASTA format of full-length … WebAs a first step, all 706 membrane proteins were extracted from the cyanobacteriumSynechocystis sp. genome (3,165 genes; Kaneko et al., 1996) by …

Web7 nov 2013 · Novel human membrane proteins can be predicted by searching the membrane protein orthologs in other organisms. Among various eukaryotic organisms, 55 model organisms, which are currently available in Ensembl database [], were selected.The collection procedures for the human membrane proteins were identically performed for … Web12 ore fa · For the Western blotting test of the Arabidopsis leaves, the protein content was measured using the method of Bradford (1976). Proteins were separated according to molecular weight by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) on a 10%–14% gradient gel and then transferred to an immobilon-P …

WebAll subcellular localisation data is from SUBA, the Arabidopsis Subcellular Database (Hooper et al., 2024). Additional protein function data is from MapMan (Usadel et al., … WebMembrane-protein Interaction Network Database. MIND contains the results of a binary split ubiquitin interaction screen of Arabidopsis thaliana membrane proteins and …

Web12 apr 2024 · The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut (Arachis …

Web27 feb 2007 · Mca1 was localized to the yeast plasma membrane as an integral membrane protein and mediated Ca (2+) influx. Mca1 also increased [Ca (2+)] (cyt) upon plasma membrane distortion in Arabidopsis. The growth of MCA1-overexpressing plants was impaired in a high-calcium but not a low-calcium medium. The primary roots of mca1-null … lined sweaters for men golfWebWe describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing ~6,200 highly reliable interactions … lined sweatpantsWeb1 dic 2024 · The dark proteome, as we define it, is the part of the proteome where 3D structure has not been observed either by homology modeling or by experimental characterization in the protein universe. From the 550.116 proteins available in Swiss-Prot (as of July 2016), 43.2% of the eukarya universe and 49.2% of the virus universe are … lined sweaters for womenWeb28 apr 2024 · To facilitate structural analysis of bitopic membrane proteins, we previously created the Membranome database, 2, 3 a web resource dedicated to this functionally relevant protein class. The Membranome database compiles available structural data for all bitopic proteins of six organisms (Homo sapiens, Arabidopsis thaliana, Dictiostelium ... lined sweaters for menWeb1 set 2004 · Here, we present an analysis of several hundred phosphorylation sites on ∼200 putative plasma membrane proteins of Arabidopsis collected from multiple LC-MS/MS … lined sweatpants for menWeb10 ago 2016 · Further, for each protein, the database provides an FMAP-generated 3D model of a TM α-helical domain as a coordinate file supplemented by the static and … lined sweatpants for womenWeb28 ott 2006 · We have undertaken to bring these various data sources together to build SUBA, a SUB cellular location database for A rabidopsis proteins. The localisation … lined sweatpants womens plus